OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4885/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle                   29
RDF/XML Syntax           28
unknown                   1
OWL/XML Syntax            1
OWL Functional Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
Declaration 59 1104.916667 3216.122664 0.0 103.00 411.5 884.00 22818.0
AnnotationAssertion 58 5691.416667 20062.532715 0.0 198.25 1089.0 2302.50 124680.0
SubClassOf 57 1409.150000 4359.640320 0.0 31.25 293.5 901.75 24611.0
ObjectPropertyRange 53 36.250000 34.978747 0.0 12.75 28.5 53.25 150.0
ObjectPropertyDomain 52 34.350000 35.451005 0.0 8.75 22.5 55.50 148.0
DataPropertyRange 47 11.216667 17.851641 0.0 1.00 5.0 11.00 97.0
SubObjectPropertyOf 46 47.616667 61.148081 0.0 1.75 26.5 63.25 282.0
InverseObjectProperties 44 12.900000 22.440656 0.0 0.00 3.0 17.00 128.0
DataPropertyDomain 43 11.300000 31.905740 0.0 0.00 2.0 7.00 235.0
DisjointClasses 42 224.350000 1583.334197 0.0 0.00 4.0 20.00 12277.0
ClassAssertion 41 97.850000 346.259667 0.0 0.00 2.0 20.25 1952.0
EquivalentClasses 38 150.916667 793.112134 0.0 0.00 7.5 67.25 6154.0
SubDataPropertyOf 32 5.550000 10.711035 0.0 0.00 1.0 7.00 63.0
TransitiveObjectProperty 31 3.966667 6.412294 0.0 0.00 1.0 5.25 30.0
SubAnnotationPropertyOf 31 12.916667 32.957236 0.0 0.00 2.0 15.50 228.0
FunctionalObjectProperty 29 2.733333 4.136922 0.0 0.00 0.0 4.00 17.0
FunctionalDataProperty 25 1.733333 3.922411 0.0 0.00 0.0 2.00 22.0
InverseFunctionalObjectProperty 23 1.600000 2.781293 0.0 0.00 0.0 1.25 12.0
AnnotationPropertyRangeOf 23 6.016667 18.329833 0.0 0.00 0.0 2.00 134.0
SymmetricObjectProperty 21 3.016667 6.043603 0.0 0.00 0.0 4.25 35.0
IrrefexiveObjectProperty 20 3.400000 6.825178 0.0 0.00 0.0 1.00 24.0
AsymmetricObjectProperty 18 2.933333 5.940001 0.0 0.00 0.0 1.00 20.0
ObjectPropertyAssertion 17 235.833333 1342.722433 0.0 0.00 0.0 2.25 10226.0
DisjointUnion 14 7.200000 19.463830 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 13 91.900000 485.210760 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 12 3.300000 15.803132 0.0 0.00 0.0 0.00 120.0
AnnotationPropertyDomain 8 0.233333 0.851055 0.0 0.00 0.0 0.00 6.0
ReflexiveObjectProperty 8 0.166667 0.492887 0.0 0.00 0.0 0.00 3.0
EquivalentObjectProperties 8 1.266667 4.970648 0.0 0.00 0.0 0.00 36.0
DifferentIndividuals 6 0.350000 1.325436 0.0 0.00 0.0 0.00 7.0
DisjointObjectProperties 5 0.300000 1.441515 0.0 0.00 0.0 0.00 10.0
Rule 5 0.700000 3.445951 0.0 0.00 0.0 0.00 25.0
SameIndividual 3 0.516667 2.507559 0.0 0.00 0.0 0.00 17.0
NegativeObjectPropertyAssertion 2 0.033333 0.181020 0.0 0.00 0.0 0.00 1.0
EquivalentDataProperties 2 0.250000 1.433557 0.0 0.00 0.0 0.00 10.0
DatatypeDefinition 2 0.333333 2.454098 0.0 0.00 0.0 0.00 19.0
DisjointDataProperties 1 0.033333 0.258199 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 59 4873.916667 13923.971774 0.0 214.75 1142.0 2996.75 78659.0
ObjectUnionOf 42 15.633333 22.871021 0.0 0.00 6.0 14.00 88.0
ObjectAllValuesFrom 37 29.133333 59.483217 0.0 0.00 5.0 41.75 400.0
ObjectSomeValuesFrom 36 402.283333 2149.426570 0.0 0.00 9.0 109.00 16630.0
ObjectIntersectionOf 32 135.833333 803.773372 0.0 0.00 3.0 17.50 6224.0
ObjectExactCardinality 29 5.750000 16.392045 0.0 0.00 0.0 5.00 115.0
DataExactCardinality 24 2.500000 4.216594 0.0 0.00 0.0 3.00 18.0
DataHasValue 19 31.000000 77.421365 0.0 0.00 0.0 5.00 494.0
DataAllValuesFrom 19 1.016667 1.882044 0.0 0.00 0.0 2.00 9.0
ObjectComplementOf 18 5.533333 23.579269 0.0 0.00 0.0 4.25 179.0
DataSomeValuesFrom 18 1.550000 3.285433 0.0 0.00 0.0 2.25 17.0
ObjectHasValue 16 8.966667 32.145836 0.0 0.00 0.0 1.00 189.0
ObjectMinCardinality 15 1.416667 4.227800 0.0 0.00 0.0 0.25 28.0
ObjectMaxCardinality 12 15.750000 115.375235 0.0 0.00 0.0 0.00 894.0
ObjectOneOf 10 12.450000 53.601930 0.0 0.00 0.0 0.00 275.0
DataMaxCardinality 6 1.716667 8.409219 0.0 0.00 0.0 0.00 62.0
DataMinCardinality 4 0.283333 1.814178 0.0 0.00 0.0 0.00 14.0
ObjectHasSelf 1 0.016667 0.129099 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.345 0.556 0.133
37 PROVO 0.344 0.504 0.183
17 FOAF 0.342 0.333 0.350
30 OBO 0.335 0.571 0.100
19 IAO 0.300 0.600 0.000
0 AMONTOLOGY 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
36 PMD 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
26 MaterialsMine 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
10 EMMO_BattINFO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
27 NPO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
51 mat 0.222 0.444 0.000
53 mvc 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
55 nfdicore 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
58 periodictable 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
57 opmw 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
54 mwo 0.189 0.378 0.000
45 SSN 0.189 0.378 0.000
33 OSMO 0.189 0.378 0.000
48 bmo 0.189 0.378 0.000
39 QUDV 0.167 0.333 0.000
52 matinfo 0.167 0.333 0.000
59 ssos 0.155 0.311 0.000
56 ontorule 0.155 0.311 0.000
42 SKOS_MDO 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 60.0 0.236183 0.053113 0.0 0.22125 0.234 0.26675 0.345
score_dash 60.0 0.459367 0.093398 0.0 0.43250 0.467 0.50975 0.600
score_impact 60.0 0.012767 0.054290 0.0 0.00000 0.000 0.00000 0.350

OBO dependency graph